HHsearch alignment for GI: 254780809 and conserved domain: COG1217
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].
Probab=98.51 E-value=4.4e-07 Score=68.92 Aligned_cols=142 Identities=22% Similarity=0.264 Sum_probs=97.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCC-----------HHCCCCC----CCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHH
Q ss_conf 0243114663188899998552-----------0002345----468721100012456835899950810002410356
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKK-----------DVAIVTD----IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~-----------~~aIVs~----~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE 285 (440)
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred EEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCCCCCCCCHHH
T ss_conf 06899984488102899998731654456520144037642344349389851524620883898765898677662545
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCHHHH--------HHHCCCCCCCCCCCCCCCCCCCHHH------------------
Q ss_conf 66678889985030110201358985663--------4312898532222333446542000------------------
Q gi|254780809|r 286 KEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTEEY------------------ 339 (440)
Q Consensus 286 ~~GI~ra~~~i~~aDlil~v~D~~~~~~~--------~~~~~~~~i~V~NK~Dl~~~~~~~~------------------ 339 (440)
T Consensus 87 Rv--------l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 87 RV--------LSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred HH--------HHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 11--------4323348999975558887314448999974998489996778999887899999999999819974557
Q ss_pred ---HHHHHHHHH----------HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---001333323----------2358999999999632203588
Q gi|254780809|r 340 ---DHLISSFTG----------EGLEELINKIKSILSNKFKKLP 370 (440)
Q Consensus 340 ---~~~ISaktg----------~Gi~~L~~~I~~~l~~~~~~~~ 370 (440)
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d 202 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLD 202 (603)
T ss_pred CCEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 87079854147510158655555316899999975899989998