HHsearch alignment for GI: 254780809 and conserved domain: COG3523

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].
Probab=97.31  E-value=0.00027  Score=49.55  Aligned_cols=139  Identities=17%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH------HCCHHCCCCCCCCCCEEECCCCCC-C
Q ss_conf             886401000112123332234554320230243114663188899998------552000234546872110001245-6
Q gi|254780809|r  192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL------AKKDVAIVTDIPGTTRDVLTIDLD-L  264 (440)
Q Consensus       192 ~~~~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L------~~~~~aIVs~~~GTTRD~i~~~~~-i  264 (440)
T Consensus        98 l~~~~~e~~~~l~r~~~~~~~rr~lyeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~-----~cdww  171 (1188)
T COG3523          98 LNAQLGEALRTLKRRKRGRPGRRYLYELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TR-----NCDWW  171 (1188)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCC-CC-----CCCCC
T ss_conf             9999999999999998537420046518805885488898400875155366615553312226888-73-----35754


Q ss_pred             CCEEEEEEECCHHC--CC-CHHHH---HHHHH---HHHHHHHHHCCEEECCCCCC-----HHHH-H--------------
Q ss_conf             83589995081000--24-10356---66678---88998503011020135898-----5663-4--------------
Q gi|254780809|r  265 EGYLVKISDTAGIR--ET-DDIVE---KEGIK---RTFLEVENADLILLLKEINS-----KKEI-S--------------  315 (440)
Q Consensus       265 ~g~~~~l~DTaGir--~t-~d~IE---~~GI~---ra~~~i~~aDlil~v~D~~~-----~~~~-~--------------  315 (440)
T Consensus       172 f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~  251 (1188)
T COG3523         172 FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE  251 (1188)
T ss_pred             CCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             25534898587524436675023488899988899973557888637999789997389999999999999999999998


Q ss_pred             -HHCCCCCCCCCCCCCCCCCCC
Q ss_conf             -312898532222333446542
Q gi|254780809|r  316 -FPKNIDFIFIGTKSDLYSTYT  336 (440)
Q Consensus       316 -~~~~~~~i~V~NK~Dl~~~~~  336 (440)
T Consensus       252 tL~~~~PVYl~lTk~Dll~GF~  273 (1188)
T COG3523         252 TLHARLPVYLVLTKADLLPGFE  273 (1188)
T ss_pred             HHCCCCCEEEEEECCCCCCCHH
T ss_conf             4156776389986210021579