HHsearch alignment for GI: 254780809 and conserved domain: COG3523
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].
Probab=97.31 E-value=0.00027 Score=49.55 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH------HCCHHCCCCCCCCCCEEECCCCCC-C
Q ss_conf 886401000112123332234554320230243114663188899998------552000234546872110001245-6
Q gi|254780809|r 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL------AKKDVAIVTDIPGTTRDVLTIDLD-L 264 (440)
Q Consensus 192 ~~~~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L------~~~~~aIVs~~~GTTRD~i~~~~~-i 264 (440)
T Consensus 98 l~~~~~e~~~~l~r~~~~~~~rr~lyeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~-----~cdww 171 (1188)
T COG3523 98 LNAQLGEALRTLKRRKRGRPGRRYLYELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TR-----NCDWW 171 (1188)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCC-CC-----CCCCC
T ss_conf 9999999999999998537420046518805885488898400875155366615553312226888-73-----35754
Q ss_pred CCEEEEEEECCHHC--CC-CHHHH---HHHHH---HHHHHHHHHCCEEECCCCCC-----HHHH-H--------------
Q ss_conf 83589995081000--24-10356---66678---88998503011020135898-----5663-4--------------
Q gi|254780809|r 265 EGYLVKISDTAGIR--ET-DDIVE---KEGIK---RTFLEVENADLILLLKEINS-----KKEI-S-------------- 315 (440)
Q Consensus 265 ~g~~~~l~DTaGir--~t-~d~IE---~~GI~---ra~~~i~~aDlil~v~D~~~-----~~~~-~-------------- 315 (440)
T Consensus 172 f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~ 251 (1188)
T COG3523 172 FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE 251 (1188)
T ss_pred CCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 25534898587524436675023488899988899973557888637999789997389999999999999999999998
Q ss_pred -HHCCCCCCCCCCCCCCCCCCC
Q ss_conf -312898532222333446542
Q gi|254780809|r 316 -FPKNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 316 -~~~~~~~i~V~NK~Dl~~~~~ 336 (440)
T Consensus 252 tL~~~~PVYl~lTk~Dll~GF~ 273 (1188)
T COG3523 252 TLHARLPVYLVLTKADLLPGFE 273 (1188)
T ss_pred HHCCCCCEEEEEECCCCCCCHH
T ss_conf 4156776389986210021579