HHsearch alignment for GI: 254780809 and conserved domain: COG4987
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=95.91 E-value=0.0035 Score=41.86 Aligned_cols=132 Identities=22% Similarity=0.293 Sum_probs=76.1
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100012456835899950810002410356666788899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~------------~~~~G~i~~~g~~~~~l~~~~~~e~i~------------ 415 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAW------------DPQQGSITLNGVEIASLDEQALRETIS------------ 415 (573)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCC------------CCCCCEEEECCCCHHHCCHHHHHHHHH------------
T ss_conf 32588768887799987899999997235------------878873657886733188366899875------------
Q ss_pred HHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 85030110201358985663431289853222233344654200000133332323589999999996322035886320
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~ 374 (440)
T Consensus 416 vl~Qr---~hlF~~Tlr~NL~---------lA-~~~-----AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LS 476 (573)
T COG4987 416 VLTQR---VHLFSGTLRDNLR---------LA-NPD-----ASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS 476 (573)
T ss_pred HHCCC---HHHHHHHHHHHHH---------HC-CCC-----CCH-HHHHHHHHHCCHHHHHHHCHHHHHCHHCCCCCCCC
T ss_conf 41232---1777778998773---------05-999-----988-99999999818799987473534222225997478
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 148999999999999
Q gi|254780809|r 375 SHKRHLYHLSQTVRY 389 (440)
Q Consensus 375 ~~~Rq~~~L~~a~~~ 389 (440)
T Consensus 477 GGE~rRLAlAR~LL~ 491 (573)
T COG4987 477 GGERRRLALARALLH 491 (573)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 138999999999970