HHsearch alignment for GI: 254780809 and conserved domain: COG4987

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=95.91  E-value=0.0035  Score=41.86  Aligned_cols=132  Identities=22%  Similarity=0.293  Sum_probs=76.1

Q ss_pred             HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf             43202302431146631888999985520002345468721100012456835899950810002410356666788899
Q gi|254780809|r  215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL  294 (440)
Q Consensus       215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~  294 (440)
T Consensus       360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~------------~~~~G~i~~~g~~~~~l~~~~~~e~i~------------  415 (573)
T COG4987         360 TLAQGEKVAILGRSGSGKSTLLQLLAGAW------------DPQQGSITLNGVEIASLDEQALRETIS------------  415 (573)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHCC------------CCCCCEEEECCCCHHHCCHHHHHHHHH------------
T ss_conf             32588768887799987899999997235------------878873657886733188366899875------------


Q ss_pred             HHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             85030110201358985663431289853222233344654200000133332323589999999996322035886320
Q gi|254780809|r  295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP  374 (440)
Q Consensus       295 ~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~  374 (440)
T Consensus       416 vl~Qr---~hlF~~Tlr~NL~---------lA-~~~-----AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LS  476 (573)
T COG4987         416 VLTQR---VHLFSGTLRDNLR---------LA-NPD-----ASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS  476 (573)
T ss_pred             HHCCC---HHHHHHHHHHHHH---------HC-CCC-----CCH-HHHHHHHHHCCHHHHHHHCHHHHHCHHCCCCCCCC
T ss_conf             41232---1777778998773---------05-999-----988-99999999818799987473534222225997478


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             148999999999999
Q gi|254780809|r  375 SHKRHLYHLSQTVRY  389 (440)
Q Consensus       375 ~~~Rq~~~L~~a~~~  389 (440)
T Consensus       477 GGE~rRLAlAR~LL~  491 (573)
T COG4987         477 GGERRRLALARALLH  491 (573)
T ss_pred             CHHHHHHHHHHHHHC
T ss_conf             138999999999970