HHsearch alignment for GI: 254780809 and conserved domain: COG5258
>COG5258 GTPBP1 GTPase [General function prediction only].
Probab=96.77 E-value=0.0005 Score=47.75 Aligned_cols=136 Identities=24% Similarity=0.253 Sum_probs=73.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCC--C----CCEEEEEE--ECC---HHCCCCHHH
Q ss_conf 320230243114663188899998552000234546872110001245--6----83589995--081---000241035
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--L----EGYLVKIS--DTA---GIRETDDIV 284 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~--i----~g~~~~l~--DTa---Gir~t~d~I 284 (440)
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~---~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGR---LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred CCCEEEEEEECCCCCCCCEEEEEEEECC---CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHH
T ss_conf 9963899974244578635987898457---7788840211345416777616532226999972499267605852077
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCCC-CHHH-----------------------------------HHHHCCCCCCCCCCC
Q ss_conf 6666788899850301102013589-8566-----------------------------------343128985322223
Q gi|254780809|r 285 EKEGIKRTFLEVENADLILLLKEIN-SKKE-----------------------------------ISFPKNIDFIFIGTK 328 (440)
Q Consensus 285 E~~GI~ra~~~i~~aDlil~v~D~~-~~~~-----------------------------------~~~~~~~~~i~V~NK 328 (440)
T Consensus 191 E~~------~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK 264 (527)
T COG5258 191 EKA------AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTK 264 (527)
T ss_pred HHH------HHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 776------76652030899985378627899888887326666279999816773033067656564616977999995
Q ss_pred CCCCCCCCH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 334465420----------------------------------------00001333323235899999999
Q gi|254780809|r 329 SDLYSTYTE----------------------------------------EYDHLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 329 ~Dl~~~~~~----------------------------------------~~~~~ISaktg~Gi~~L~~~I~~ 360 (440)
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 256827889999999999999743465355055326776543323782577999822457538999999974