HHsearch alignment for GI: 254780809 and conserved domain: COG5258

>COG5258 GTPBP1 GTPase [General function prediction only].
Probab=96.77  E-value=0.0005  Score=47.75  Aligned_cols=136  Identities=24%  Similarity=0.253  Sum_probs=73.2

Q ss_pred             HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCC--C----CCEEEEEE--ECC---HHCCCCHHH
Q ss_conf             320230243114663188899998552000234546872110001245--6----83589995--081---000241035
Q gi|254780809|r  216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--L----EGYLVKIS--DTA---GIRETDDIV  284 (440)
Q Consensus       216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~--i----~g~~~~l~--DTa---Gir~t~d~I  284 (440)
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~---~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a  190 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGR---LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA  190 (527)
T ss_pred             CCCEEEEEEECCCCCCCCEEEEEEEECC---CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHH
T ss_conf             9963899974244578635987898457---7788840211345416777616532226999972499267605852077


Q ss_pred             HHHHHHHHHHHHHHHCCEEECCCCC-CHHH-----------------------------------HHHHCCCCCCCCCCC
Q ss_conf             6666788899850301102013589-8566-----------------------------------343128985322223
Q gi|254780809|r  285 EKEGIKRTFLEVENADLILLLKEIN-SKKE-----------------------------------ISFPKNIDFIFIGTK  328 (440)
Q Consensus       285 E~~GI~ra~~~i~~aDlil~v~D~~-~~~~-----------------------------------~~~~~~~~~i~V~NK  328 (440)
T Consensus       191 E~~------~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK  264 (527)
T COG5258         191 EKA------AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTK  264 (527)
T ss_pred             HHH------HHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             776------76652030899985378627899888887326666279999816773033067656564616977999995


Q ss_pred             CCCCCCCCH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             334465420----------------------------------------00001333323235899999999
Q gi|254780809|r  329 SDLYSTYTE----------------------------------------EYDHLISSFTGEGLEELINKIKS  360 (440)
Q Consensus       329 ~Dl~~~~~~----------------------------------------~~~~~ISaktg~Gi~~L~~~I~~  360 (440)
T Consensus       265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf             256827889999999999999743465355055326776543323782577999822457538999999974