HHsearch alignment for GI: 254780809 and conserved domain: PRK04004
>PRK04004 translation initiation factor IF-2; Validated.
Probab=99.03 E-value=1.1e-09 Score=86.95 Aligned_cols=133 Identities=26% Similarity=0.414 Sum_probs=82.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC-CE---------EECC-----------CCCCCCCEEEEEEEC
Q ss_conf 32023024311466318889999855200023454687-21---------1000-----------124568358999508
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TR---------DVLT-----------IDLDLEGYLVKISDT 274 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT-TR---------D~i~-----------~~~~i~g~~~~l~DT 274 (440)
T Consensus 3 lR~P-IvtimGHVDhGKTsLLD~iR~t~V--~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipg--llfiDT 77 (592)
T PRK04004 3 LRQP-IVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPG--LLFIDT 77 (592)
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCC--CEEECC
T ss_conf 8898-899978737776368999862877--35557762323065984123101103443344332345677--557659
Q ss_pred CHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH--------
Q ss_conf 100024103566667888998503011020135898---56634-----31289853222233344654200--------
Q gi|254780809|r 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE-------- 338 (440)
Q Consensus 275 aGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~-------- 338 (440)
T Consensus 78 PGH-e------aFt~mR~-RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~ 149 (592)
T PRK04004 78 PGH-E------AFSNLRK-RGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLES 149 (592)
T ss_pred CCH-H------HHHHHHH-HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 965-9------9999997-3674578899999778886762799999999759988999862235666776767411232
Q ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------------------------------------------00013333232358999999999
Q gi|254780809|r 339 -------------------------------------------YDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 339 -------------------------------------------~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
T Consensus 150 ~~~q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~L 215 (592)
T PRK04004 150 FKKQSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 215 (592)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 231738899999888888889998728763221454345881489978205689989999999999