HHsearch alignment for GI: 254780809 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.11  E-value=0.0011  Score=45.25  Aligned_cols=117  Identities=23%  Similarity=0.236  Sum_probs=58.7

Q ss_pred             HHHCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCC-C---------------CCCCC-------EEECCCCCCC
Q ss_conf             320230243114663188899998552--------000234-5---------------46872-------1100012456
Q gi|254780809|r  216 IRNGYKIVILGHSNAGKSSLFNALAKK--------DVAIVT-D---------------IPGTT-------RDVLTIDLDL  264 (440)
Q Consensus       216 l~~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs-~---------------~~GTT-------RD~i~~~~~i  264 (440)
T Consensus       173 ~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l  252 (404)
T PRK06995        173 MERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAEL  252 (404)
T ss_pred             HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf             11475589866888763758999999999983898379997687547899999999987595599959999999999970


Q ss_pred             CCEEEEEEECCHHCCCCHH--HHHHHHHHHHHHHHHHCCEEECCCCCCH-HHHH-HH---CC-CCCCCCCCCCCCCCCCC
Q ss_conf             8358999508100024103--5666678889985030110201358985-6634-31---28-98532222333446542
Q gi|254780809|r  265 EGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-KEIS-FP---KN-IDFIFIGTKSDLYSTYT  336 (440)
Q Consensus       265 ~g~~~~l~DTaGir~t~d~--IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~~~-~~---~~-~~~i~V~NK~Dl~~~~~  336 (440)
T Consensus       253 ~~~dlILIDTaGr-s~rD~~~~e~l~---~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~TKLDEt~~~G  328 (404)
T PRK06995        253 RNKHIVLIDTVGM-SQRDRMVSEQIA---MLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLG  328 (404)
T ss_pred             CCCCEEEEECCCC-CCCCHHHHHHHH---HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf             8999999809998-976888999999---997357885289997798999999999998446999839983040679723