HHsearch alignment for GI: 254780809 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.11 E-value=0.0011 Score=45.25 Aligned_cols=117 Identities=23% Similarity=0.236 Sum_probs=58.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCC-C---------------CCCCC-------EEECCCCCCC
Q ss_conf 320230243114663188899998552--------000234-5---------------46872-------1100012456
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKK--------DVAIVT-D---------------IPGTT-------RDVLTIDLDL 264 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs-~---------------~~GTT-------RD~i~~~~~i 264 (440)
T Consensus 173 ~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l 252 (404)
T PRK06995 173 MERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAEL 252 (404)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 11475589866888763758999999999983898379997687547899999999987595599959999999999970
Q ss_pred CCEEEEEEECCHHCCCCHH--HHHHHHHHHHHHHHHHCCEEECCCCCCH-HHHH-HH---CC-CCCCCCCCCCCCCCCCC
Q ss_conf 8358999508100024103--5666678889985030110201358985-6634-31---28-98532222333446542
Q gi|254780809|r 265 EGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-KEIS-FP---KN-IDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 265 ~g~~~~l~DTaGir~t~d~--IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~~~-~~---~~-~~~i~V~NK~Dl~~~~~ 336 (440)
T Consensus 253 ~~~dlILIDTaGr-s~rD~~~~e~l~---~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~TKLDEt~~~G 328 (404)
T PRK06995 253 RNKHIVLIDTVGM-SQRDRMVSEQIA---MLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLG 328 (404)
T ss_pred CCCCEEEEECCCC-CCCCHHHHHHHH---HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 8999999809998-976888999999---997357885289997798999999999998446999839983040679723