HHsearch alignment for GI: 254780809 and conserved domain: PRK10867
>PRK10867 signal recognition particle protein; Provisional.
Probab=96.93 E-value=0.03 Score=35.41 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HCC-CEEEECCCCCCHHHHHHHHHCC-----H--HCCCC-CC--CC------------
Q ss_conf 100011212333223455432-023-0243114663188899998552-----0--00234-54--68------------
Q gi|254780809|r 197 LFLKNDISSHISQGKLGEIIR-NGY-KIVILGHSNAGKSSLFNALAKK-----D--VAIVT-DI--PG------------ 252 (440)
Q Consensus 197 ~~i~~~l~~ll~~~~~~~~l~-~g~-~v~i~G~pN~GKSSL~N~L~~~-----~--~aIVs-~~--~G------------ 252 (440)
T Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~ 155 (453)
T PRK10867 76 KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV 155 (453)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999985888766633789996999974688851858999999999738983798558877058999999999851
Q ss_pred --------CCEEECC---C---CCCCCCEEEEEEECCHHCCCC-HHHHHHHHHHHHHHHHHHCCEEECCCCCCHH
Q ss_conf --------7211000---1---245683589995081000241-0356666788899850301102013589856
Q gi|254780809|r 253 --------TTRDVLT---I---DLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKK 312 (440)
Q Consensus 253 --------TTRD~i~---~---~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~ 312 (440)
T Consensus 156 ~v~~~~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El--~-~i~~~~~P~e~llV~Da~~GQ 227 (453)
T PRK10867 156 GVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI--K-QVHASINPVETLFVVDAMTGQ 227 (453)
T ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHH--H-HHHHHHCCCCEEEEEECCCCH
T ss_conf 98043678899889999999999997799999997876012108889999--9-998763787137974322356