HHsearch alignment for GI: 254780809 and conserved domain: PRK11537
>PRK11537 putative GTP-binding protein YjiA; Provisional.
Probab=95.95 E-value=0.02 Score=36.54 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHC----CHHCCCCCCCCCCE-E--EC----CCCCCCC-----------------------
Q ss_conf 3024311466318889999855----20002345468721-1--00----0124568-----------------------
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTR-D--VL----TIDLDLE----------------------- 265 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~----~~~aIVs~~~GTTR-D--~i----~~~~~i~----------------------- 265 (440)
T Consensus 5 PVtiltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs~~~dl~~~l~~l~~~~ 84 (317)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (317)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 88998308888999999999727789978999837614533298873565326884477368730522899999999866
Q ss_pred ---C--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH--------HHHCCCCCCCCCCCCCCC
Q ss_conf ---3--589995081000241035666678889985030110201358985663--------431289853222233344
Q gi|254780809|r 266 ---G--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLY 332 (440)
Q Consensus 266 ---g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~--------~~~~~~~~i~V~NK~Dl~ 332 (440)
T Consensus 85 ~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~l~~~~~~~~Qi~~AD-~illnK~Dlv 163 (317)
T PRK11537 85 DRGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD-RILLTKTDVA 163 (317)
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCC-EEEEECCCCC
T ss_conf 435777547999625778839999998612565653203655999866555766530346676663186-8997420023
Q ss_pred CCC
Q ss_conf 654
Q gi|254780809|r 333 STY 335 (440)
Q Consensus 333 ~~~ 335 (440)
T Consensus 164 ~~~ 166 (317)
T PRK11537 164 GEA 166 (317)
T ss_pred CHH
T ss_conf 659