HHsearch alignment for GI: 254780809 and conserved domain: PRK12289

Probab=98.23  E-value=1.8e-06  Score=64.75  Aligned_cols=77  Identities=35%  Similarity=0.401  Sum_probs=46.5

Q ss_pred             HHHCCCEEEECCCCCCHHHHHHHHHCCH---HCCCCCCC----CCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHH
Q ss_conf             3202302431146631888999985520---00234546----8721100012456835899950810002410356666
Q gi|254780809|r  216 IRNGYKIVILGHSNAGKSSLFNALAKKD---VAIVTDIP----GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG  288 (440)
Q Consensus       216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~---~aIVs~~~----GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~G  288 (440)
T Consensus       169 L~~k~-tv~~G~SGVGKSSLIN~L~p~~~l~TgeVS~k~~rGrHTTr~~eL~~L~~Gg---~iiDTPGf~~~~l~~~~~e  244 (351)
T PRK12289        169 LRNKI-TVVAGPSGVGKSSLINRLIPDVELRVGEVSGKLQRGRHTTRHVELFELPNGG---LLADTPGFNQPDLDCSPEE  244 (351)
T ss_pred             HCCCE-EEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCC---EEEECCCCCCCCCCCCHHH
T ss_conf             75986-9998179887889887637412345665406489987835516899948995---8997979887888779789


Q ss_pred             HHHHHHHH
Q ss_conf             78889985
Q gi|254780809|r  289 IKRTFLEV  296 (440)
Q Consensus       289 I~ra~~~i  296 (440)
T Consensus       245 L~~~FpE~  252 (351)
T PRK12289        245 LAHYFPEA  252 (351)
T ss_pred             HHHHCHHH
T ss_conf             98846678