HHsearch alignment for GI: 254780809 and conserved domain: PTZ00099
>PTZ00099 rab6; Provisional.
Probab=98.44 E-value=3.8e-07 Score=69.39 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=71.3
Q ss_pred EECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHH-------H-----HCCCC
Q ss_conf 100012456835--899950810002410356666788899850301102013589856634-------3-----12898
Q gi|254780809|r 256 DVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------F-----PKNID 321 (440)
Q Consensus 256 D~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~-------~-----~~~~~ 321 (440)
T Consensus 16 df~~k~i~i~~~~v~l~IWDTAGqE~f~--------sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~ 87 (176)
T PTZ00099 16 DFLSKTLYLDEGPVRLQLWDTAGQERFR--------SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI 87 (176)
T ss_pred EEEEEEEEECCEEEEEEEEECCCCCCHH--------HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8899999999999999999799863413--------57688707986799985042077899999999999985388774
Q ss_pred CCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53222233344654200-------------000133332323589999999996322
Q gi|254780809|r 322 FIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 322 ~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
T Consensus 88 iiLVGNK~DL~~~r~V~~ee~~~~A~~~~~~f~EtSAktg~nV~e~F~~la~~i~~~ 144 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred EEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCH
T ss_conf 399985565586168599999999998599999984899949899999999986080