HHsearch alignment for GI: 254780809 and conserved domain: TIGR00073
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.58 E-value=8.7e-05 Score=53.01 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHHHCCHH------CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 3223455432023-024311466318889999855200------023454687211000124568358999508100024
Q gi|254780809|r 208 SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV------AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 208 ~~~~~~~~l~~g~-~v~i~G~pN~GKSSL~N~L~~~~~------aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
T Consensus 22 A~~Nr~~~~~~g~~~lNfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~-t~~DA--~RlR~~G~~a~~~nTG----k 94 (225)
T TIGR00073 22 AEKNRERFDKEGLLVLNFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQ-TKNDA--DRLRKYGVPAIQINTG----K 94 (225)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHH-HHHHH--HHHHHCCCEEEEECCC----C
T ss_conf 999999998659789980258861158999999998457897899975532-25569--9998649868863688----6
Q ss_pred CHHHHHHHHH---HHHHHHH--HH-CCEEE------CCCCC----CHHH---------HHHHCCCC------CCCCCCCC
Q ss_conf 1035666678---8899850--30-11020------13589----8566---------34312898------53222233
Q gi|254780809|r 281 DDIVEKEGIK---RTFLEVE--NA-DLILL------LKEIN----SKKE---------ISFPKNID------FIFIGTKS 329 (440)
Q Consensus 281 ~d~IE~~GI~---ra~~~i~--~a-Dlil~------v~D~~----~~~~---------~~~~~~~~------~i~V~NK~ 329 (440)
T Consensus 95 ~CHLdA~mv~G~~~~L~~~~ld~~~DlL~IENVGNLvCP~~FdLGe~~rVvllSVTEGdDk~lKyP~~F~~Ad~~~inK~ 174 (225)
T TIGR00073 95 ECHLDAHMVAGAIHALKDLPLDDISDLLLIENVGNLVCPADFDLGEHMRVVLLSVTEGDDKVLKYPAMFKEADLILINKV 174 (225)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCHH
T ss_conf 44401667865875542168887146268864476100673112356307999865899965466158874445621478
Q ss_pred CCCCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3446542---------------00000133332323589999999996
Q gi|254780809|r 330 DLYSTYT---------------EEYDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 330 Dl~~~~~---------------~~~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
T Consensus 175 DL~~~v~~D~ek~~~d~~~~nP~a~Ii~~S~ktg~Gl~~w~~~l~~~~ 222 (225)
T TIGR00073 175 DLAEAVGFDVEKMKADARKINPEAEIILVSAKTGKGLDEWLEFLEGKK 222 (225)
T ss_pred HHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899770736789999998628950799863689734789999999864