HHsearch alignment for GI: 254780809 and conserved domain: TIGR01393
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=99.34 E-value=1.9e-12 Score=106.22 Aligned_cols=140 Identities=26% Similarity=0.358 Sum_probs=97.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCHHCCCCC---------------CCCCCEEECCCCCCC----CC--EEEEEEECCHHCCC
Q ss_conf 2431146631888999985520002345---------------468721100012456----83--58999508100024
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKDVAIVTD---------------IPGTTRDVLTIDLDL----EG--YLVKISDTAGIRET 280 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~~aIVs~---------------~~GTTRD~i~~~~~i----~g--~~~~l~DTaGir~t 280 (440)
T Consensus 6 FsIIAHIDHGKSTLADRlle~T~~~-s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPGHVDF 84 (598)
T TIGR01393 6 FSIIAHIDHGKSTLADRLLEKTGAV-SEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPGHVDF 84 (598)
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCC-CCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 6788462489324889999861745-620254305775100000582011563475337533887889964528897212
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH--------HHHHHCCCCCCCCCCCCCCCCCCCHH--------------
Q ss_conf 10356666788899850301102013589856--------63431289853222233344654200--------------
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEE-------------- 338 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~--------~~~~~~~~~~i~V~NK~Dl~~~~~~~-------------- 338 (440)
T Consensus 85 sYE-----VSRSLAACEGA---LL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~ 156 (598)
T TIGR01393 85 SYE-----VSRSLAACEGA---LLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDAS 156 (598)
T ss_pred CHH-----HHHHHHHHCCE---EEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 737-----88888871640---3561410323588899998875618758477825368888858999987654188964
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 00013333232358999999999632203588
Q gi|254780809|r 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLP 370 (440)
Q Consensus 339 ~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~ 370 (440)
T Consensus 157 ~ai~~SAKtG~Gi~e~LEaIv~~vPpP~Gd~~ 188 (598)
T TIGR01393 157 EAILASAKTGIGIEEILEAIVKRVPPPKGDPD 188 (598)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 30387503678889998897101810011388