HHsearch alignment for GI: 254780809 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.94 E-value=7.9e-27 Score=205.95 Aligned_cols=174 Identities=30% Similarity=0.378 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHHC-CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCC
Q ss_conf 33258888640100011212333223455--43202-3024311466318889999855200023454687211000124
Q gi|254780809|r 186 NFSSKEVLNDILFLKNDISSHISQGKLGE--IIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 (440)
Q Consensus 186 ~~~~~~~~~~i~~i~~~l~~ll~~~~~~~--~l~~g-~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~ 262 (440)
T Consensus 153 E~drR~i~~rI~~lk~~L~~v~~~R~~~R~~R~~~~~p~ValVGYTNAGKSTL~n~Lt~~~~-~~~d~lFaTLd~t~r~~ 231 (351)
T TIGR03156 153 ETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRAGVPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRL 231 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCEEECCCCCCEE
T ss_conf 99999999999999999999999999999987634997699966788778999999851776-41034313536732048
Q ss_pred CC-CCEEEEEEECCHH-CC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCC
Q ss_conf 56-8358999508100-02-4103566667888998503011020135898566343------------12898532222
Q gi|254780809|r 263 DL-EGYLVKISDTAGI-RE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGT 327 (440)
Q Consensus 263 ~i-~g~~~~l~DTaGi-r~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~N 327 (440)
T Consensus 232 ~l~~~~~~ll~DTVGFI~~LP~~Li~aF--~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~N 309 (351)
T TIGR03156 232 DLPDGGEVLLTDTVGFIRDLPHELVAAF--RATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYN 309 (351)
T ss_pred ECCCCCEEEEEECCCHHHHCCHHHHHHH--HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 8799976999815005630886799999--99999998598999980588847899999999999976999998899996
Q ss_pred CCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3334465420-------0000133332323589999999996
Q gi|254780809|r 328 KSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 328 K~Dl~~~~~~-------~~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
T Consensus 310 KiD~~~~~~~~~~~~~~~~~v~ISA~~g~gi~~L~~~I~~~L 351 (351)
T TIGR03156 310 KIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred CHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 701589577899873799879996899989999999999559