HHsearch alignment for GI: 254780809 and conserved domain: TIGR03348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.12 E-value=7.9e-05 Score=53.28 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=64.9
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHH------HCC-HHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCH--
Q ss_conf 554320230243114663188899998------552-0002345468721100012456-835899950810002410--
Q gi|254780809|r 213 GEIIRNGYKIVILGHSNAGKSSLFNAL------AKK-DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDD-- 282 (440)
Q Consensus 213 ~~~l~~g~~v~i~G~pN~GKSSL~N~L------~~~-~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d-- 282 (440)
T Consensus 105 ~~~ly~LPWYlviG~~gsGKTt~l~~Sgl~fPl~~~~~~~~~~g~gg-t~-----~cdwwft~~AVliDtaGry~~Q~~~ 178 (1169)
T TIGR03348 105 RRYLYDLPWYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGG-TR-----NCDWWFTDEAVLIDTAGRYTTQDSD 178 (1169)
T ss_pred CCHHHHCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCC-CC-----CCCEEEECCEEEEECCCCEECCCCC
T ss_conf 32264389589978999866899983799887741001122158899-85-----5571652787999479760268886
Q ss_pred -HHHHHHHHHHHHHHHHH------CCEEECCCCCC-----HHHHH----------------HHCCCCCCCCCCCCCCCCC
Q ss_conf -35666678889985030------11020135898-----56634----------------3128985322223334465
Q gi|254780809|r 283 -IVEKEGIKRTFLEVENA------DLILLLKEINS-----KKEIS----------------FPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 283 -~IE~~GI~ra~~~i~~a------Dlil~v~D~~~-----~~~~~----------------~~~~~~~i~V~NK~Dl~~~ 334 (440)
T Consensus 179 ~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~G 258 (1169)
T TIGR03348 179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHC
T ss_conf 40018999999999986489899876899978999747899999999999999999999982998775998664012306
Q ss_pred CC
Q ss_conf 42
Q gi|254780809|r 335 YT 336 (440)
Q Consensus 335 ~~ 336 (440)
T Consensus 259 F~ 260 (1169)
T TIGR03348 259 FE 260 (1169)
T ss_pred HH
T ss_conf 99