HHsearch alignment for GI: 254780809 and conserved domain: TIGR03348

>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.12  E-value=7.9e-05  Score=53.28  Aligned_cols=118  Identities=18%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             HHHHHHCCCEEEECCCCCCHHHHHHHH------HCC-HHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCH--
Q ss_conf             554320230243114663188899998------552-0002345468721100012456-835899950810002410--
Q gi|254780809|r  213 GEIIRNGYKIVILGHSNAGKSSLFNAL------AKK-DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDD--  282 (440)
Q Consensus       213 ~~~l~~g~~v~i~G~pN~GKSSL~N~L------~~~-~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d--  282 (440)
T Consensus       105 ~~~ly~LPWYlviG~~gsGKTt~l~~Sgl~fPl~~~~~~~~~~g~gg-t~-----~cdwwft~~AVliDtaGry~~Q~~~  178 (1169)
T TIGR03348       105 RRYLYDLPWYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGG-TR-----NCDWWFTDEAVLIDTAGRYTTQDSD  178 (1169)
T ss_pred             CCHHHHCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCC-CC-----CCCEEEECCEEEEECCCCEECCCCC
T ss_conf             32264389589978999866899983799887741001122158899-85-----5571652787999479760268886


Q ss_pred             -HHHHHHHHHHHHHHHHH------CCEEECCCCCC-----HHHHH----------------HHCCCCCCCCCCCCCCCCC
Q ss_conf             -35666678889985030------11020135898-----56634----------------3128985322223334465
Q gi|254780809|r  283 -IVEKEGIKRTFLEVENA------DLILLLKEINS-----KKEIS----------------FPKNIDFIFIGTKSDLYST  334 (440)
Q Consensus       283 -~IE~~GI~ra~~~i~~a------Dlil~v~D~~~-----~~~~~----------------~~~~~~~i~V~NK~Dl~~~  334 (440)
T Consensus       179 ~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~G  258 (1169)
T TIGR03348       179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHC
T ss_conf             40018999999999986489899876899978999747899999999999999999999982998775998664012306


Q ss_pred             CC
Q ss_conf             42
Q gi|254780809|r  335 YT  336 (440)
Q Consensus       335 ~~  336 (440)
T Consensus       259 F~  260 (1169)
T TIGR03348       259 FE  260 (1169)
T ss_pred             HH
T ss_conf             99