HHsearch alignment for GI: 254780809 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.76 E-value=0.002 Score=43.50 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=72.4
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100012456835899950810002410356666788899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
T Consensus 487 ~i~~Ge~vaIvG~sGsGKSTL~kll~Gl~~----p--------~~G~i~idg~~~~~~~~~~~r~~i~~----------- 543 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ----P--------TEGSVLLDGVDIRQIDPADLRRNIGY----------- 543 (694)
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHCCCCC----C--------CCCEEEECCEECCCCCHHHHHHHCEE-----------
T ss_conf 887997899980589878899998556758----9--------98879989854254999999730213-----------
Q ss_pred HHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 85030110201358985663431289853222233344654200000133332323589999999996322035886320
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~ 374 (440)
T Consensus 544 -v~Q-~~--~lf~gTi~eNi~~~---------------~~~~~-~~~i~~a~~~a~l~~~I~~lp~g~~t~i~e~G~~LS 603 (694)
T TIGR03375 544 -VPQ-DP--RLFYGTLRDNIALG---------------APYAD-DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred -ECC-CC--CCCCCCHHHHHHCC---------------CCCCC-HHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCC
T ss_conf -576-77--11074699998416---------------99999-999999999819799997185667877468999468
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 148999999999999
Q gi|254780809|r 375 SHKRHLYHLSQTVRY 389 (440)
Q Consensus 375 ~~~Rq~~~L~~a~~~ 389 (440)
T Consensus 604 gGqrQri~lARAl~~ 618 (694)
T TIGR03375 604 GGQRQAVALARALLR 618 (694)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999957