HHsearch alignment for GI: 254780809 and conserved domain: TIGR03499

Probab=96.62  E-value=0.011  Score=38.54  Aligned_cols=75  Identities=25%  Similarity=0.429  Sum_probs=46.0

Q ss_pred             HCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCCC-C--CCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHH
Q ss_conf             0230243114663188899998552--------0002345-4--687211000124568358999508100024103566
Q gi|254780809|r  218 NGYKIVILGHSNAGKSSLFNALAKK--------DVAIVTD-I--PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK  286 (440)
Q Consensus       218 ~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs~-~--~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~  286 (440)
T Consensus       193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRig-A~eQLk~ya~il~vp~~vv~~~~~---------  262 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIG-AVEQLKTYAKILGVPVKVARDPKE---------  262 (282)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHHHHHCCEEEEECCHHH---------
T ss_conf             6727999778887578899999999999738996799980777678-999999999995974899399999---------


Q ss_pred             HHHHHHHHHHHHHCCEEE
Q ss_conf             667888998503011020
Q gi|254780809|r  287 EGIKRTFLEVENADLILL  304 (440)
Q Consensus       287 ~GI~ra~~~i~~aDlil~  304 (440)
T Consensus       263 --l~~~l~~~~~~d~IlI  278 (282)
T TIGR03499       263 --LAKALERLRDKDLILI  278 (282)
T ss_pred             --HHHHHHHCCCCCEEEE
T ss_conf             --9999986579899998