HHsearch alignment for GI: 254780809 and conserved domain: TIGR03598

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.93  E-value=4.3e-26  Score=200.89  Aligned_cols=133  Identities=27%  Similarity=0.334  Sum_probs=96.3

Q ss_pred             HHCCCEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC---CCCHHHHH--HHHH
Q ss_conf             2023024311466318889999855200-0234546872110001245683589995081000---24103566--6678
Q gi|254780809|r  217 RNGYKIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEK--EGIK  290 (440)
Q Consensus       217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir---~t~d~IE~--~GI~  290 (440)
T Consensus        16 ~~~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~--~-~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFF--E-VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEE--E-ECCCEEEEECCCHHHCCCCHHHHHHHHHHHH
T ss_conf             889789998699988899999986898558970899736602320--1-0473699977760211278888999999999


Q ss_pred             HHHHHHHHHCCEEECCCCCCH---HHH-----HHHCCCCCCCCCCCCCCCCCCCH-----------------HHHHHHHH
Q ss_conf             889985030110201358985---663-----43128985322223334465420-----------------00001333
Q gi|254780809|r  291 RTFLEVENADLILLLKEINSK---KEI-----SFPKNIDFIFIGTKSDLYSTYTE-----------------EYDHLISS  345 (440)
Q Consensus       291 ra~~~i~~aDlil~v~D~~~~---~~~-----~~~~~~~~i~V~NK~Dl~~~~~~-----------------~~~~~ISa  345 (440)
T Consensus        93 ~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA  172 (179)
T TIGR03598        93 EYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSS  172 (179)
T ss_pred             HHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             99999886430289874377998999999999997599889999781306989999999999999733668894899979


Q ss_pred             HHHHHHH
Q ss_conf             3232358
Q gi|254780809|r  346 FTGEGLE  352 (440)
Q Consensus       346 ktg~Gi~  352 (440)
T Consensus       173 ~~g~GID  179 (179)
T TIGR03598       173 LKKTGIE  179 (179)
T ss_pred             CCCCCCC
T ss_conf             9983879