HHsearch alignment for GI: 254780809 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.93 E-value=4.3e-26 Score=200.89 Aligned_cols=133 Identities=27% Similarity=0.334 Sum_probs=96.3
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC---CCCHHHHH--HHHH
Q ss_conf 2023024311466318889999855200-0234546872110001245683589995081000---24103566--6678
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEK--EGIK 290 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir---~t~d~IE~--~GI~ 290 (440)
T Consensus 16 ~~~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~--~-~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFF--E-VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEE--E-ECCCEEEEECCCHHHCCCCHHHHHHHHHHHH
T ss_conf 889789998699988899999986898558970899736602320--1-0473699977760211278888999999999
Q ss_pred HHHHHHHHHCCEEECCCCCCH---HHH-----HHHCCCCCCCCCCCCCCCCCCCH-----------------HHHHHHHH
Q ss_conf 889985030110201358985---663-----43128985322223334465420-----------------00001333
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSK---KEI-----SFPKNIDFIFIGTKSDLYSTYTE-----------------EYDHLISS 345 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~---~~~-----~~~~~~~~i~V~NK~Dl~~~~~~-----------------~~~~~ISa 345 (440)
T Consensus 93 ~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA 172 (179)
T TIGR03598 93 EYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSS 172 (179)
T ss_pred HHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 99999886430289874377998999999999997599889999781306989999999999999733668894899979
Q ss_pred HHHHHHH
Q ss_conf 3232358
Q gi|254780809|r 346 FTGEGLE 352 (440)
Q Consensus 346 ktg~Gi~ 352 (440)
T Consensus 173 ~~g~GID 179 (179)
T TIGR03598 173 LKKTGIE 179 (179)
T ss_pred CCCCCCC
T ss_conf 9983879