HHsearch alignment for GI: 254780809 and conserved domain: cd00877
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.38 E-value=3.2e-12 Score=104.61 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC--EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872--110001245683--58999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT--RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT--RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f---~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~~----~----~l~~~y 69 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF---EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----G----GLRDGY 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC---CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H----HHHHHH
T ss_conf 9899999999888999999983999---9986873255679999999997999999975787156----6----687887
Q ss_pred HHHHCCEEECCCCCCHHHHH-----------HHCCCCCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHHHH
Q ss_conf 50301102013589856634-----------312898532222333446542000-----------00133332323589
Q gi|254780809|r 296 VENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEE 353 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~-----------~~~~~~~i~V~NK~Dl~~~~~~~~-----------~~~ISaktg~Gi~~ 353 (440)
T Consensus 70 ~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~~~~~~~~~~~~~~~~~~EtSAk~~~nV~e 149 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEK 149 (166)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 40065799843789888999999999999986899989999986217503667999999997899899984589909899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999632
Q gi|254780809|r 354 LINKIKSILSN 364 (440)
Q Consensus 354 L~~~I~~~l~~ 364 (440)
T Consensus 150 ~F~~la~~il~ 160 (166)
T cd00877 150 PFLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999842