HHsearch alignment for GI: 254780809 and conserved domain: cd00880
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.95 E-value=6.6e-29 Score=220.39 Aligned_cols=138 Identities=33% Similarity=0.436 Sum_probs=114.0
Q ss_pred EECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC-EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 3114663188899998552000234546872110001245683-589995081000241035666678889985030110
Q gi|254780809|r 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 (440)
Q Consensus 224 i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g-~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDli 302 (440)
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~-~~~~~~~~~~~~~~~D~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL-GREREELARRVLERADLI 79 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCH-HHHHHHHHHHHHHHCCEE
T ss_conf 9197998999999999589961016989986564589999547865999727985222310-168999999999868989
Q ss_pred EECCCCCCHHH---H-----HHHCCCCCCCCCCCCCCCCCCCH----------------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20135898566---3-----43128985322223334465420----------------000013333232358999999
Q gi|254780809|r 303 LLLKEINSKKE---I-----SFPKNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFTGEGLEELINKI 358 (440)
Q Consensus 303 l~v~D~~~~~~---~-----~~~~~~~~i~V~NK~Dl~~~~~~----------------~~~~~ISaktg~Gi~~L~~~I 358 (440)
T Consensus 80 l~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L~~~i 159 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99987899975566999999997197427885342067878999999999999876799859999789897999999999
Q ss_pred HHHH
Q ss_conf 9996
Q gi|254780809|r 359 KSIL 362 (440)
Q Consensus 359 ~~~l 362 (440)
T Consensus 160 ~e~L 163 (163)
T cd00880 160 IEAL 163 (163)
T ss_pred HHHC
T ss_conf 9519