HHsearch alignment for GI: 254780809 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=8e-19 Score=150.39 Aligned_cols=136 Identities=23% Similarity=0.195 Sum_probs=106.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCC---------------CCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHH
Q ss_conf 0243114663188899998552000234546---------------8721100012456835899950810002410356
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIP---------------GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~---------------GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE 285 (440)
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~---f-- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED---F-- 75 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHH---H--
T ss_conf 98999179989999999999764723568625888505777888638413222799998998999996998188---9--
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCH--------------------
Q ss_conf 6667888998503011020135898566--------343128985322223334465420--------------------
Q gi|254780809|r 286 KEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE-------------------- 337 (440)
Q Consensus 286 ~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~-------------------- 337 (440)
T Consensus 76 ---~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~ 152 (189)
T cd00881 76 ---SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred ---HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf ---99999998646856999987989987899999999976998799998971877562999999999998753210232
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------000013333232358999999999632
Q gi|254780809|r 338 ---------EYDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 338 ---------~~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
T Consensus 153 ~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~ 188 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 110125887759998886786979999999976879