HHsearch alignment for GI: 254780809 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.63 E-value=0.0093 Score=38.92 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=24.4
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 4320230243114663188899998552
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
T Consensus 21 ~v~~~~nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 9985998999899999899999999961