HHsearch alignment for GI: 254780809 and conserved domain: cd01858
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.68 E-value=3.6e-17 Score=138.89 Aligned_cols=57 Identities=32% Similarity=0.458 Sum_probs=49.5
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
T Consensus 101 ~~i~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr~~q~--i~~~~-~i~liDTPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITLMK-RIYLIDCPGV 157 (157)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE--EEECC-CEEEEECCCC
T ss_conf 646999982588533688988726735886598833777799--99689-9999969099