HHsearch alignment for GI: 254780809 and conserved domain: cd01858
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.16 E-value=0.00049 Score=47.76 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=46.2
Q ss_pred HHHHHHHCCEEECCCCCCHH------HHHHH----CCCCCCCCCCCCCCCCCCCHHH------------HHHHHHHHHHH
Q ss_conf 99850301102013589856------63431----2898532222333446542000------------00133332323
Q gi|254780809|r 293 FLEVENADLILLLKEINSKK------EISFP----KNIDFIFIGTKSDLYSTYTEEY------------DHLISSFTGEG 350 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~~~------~~~~~----~~~~~i~V~NK~Dl~~~~~~~~------------~~~ISaktg~G 350 (440)
T Consensus 3 ~~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~~~~~~~~w~~~l~~~~~~~~~~~s~~~~~~ 82 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred HHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 89787599999998898888878989999987537999789999894479878999999986488973999953238646
Q ss_pred HHHHHHHHHHHH
Q ss_conf 589999999996
Q gi|254780809|r 351 LEELINKIKSIL 362 (440)
Q Consensus 351 i~~L~~~I~~~l 362 (440)
T Consensus 83 ~~~l~~~l~~~~ 94 (157)
T cd01858 83 KGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999876