HHsearch alignment for GI: 254780809 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.40 E-value=1.6e-12 Score=106.71 Aligned_cols=133 Identities=26% Similarity=0.334 Sum_probs=90.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 4 ~Kiv~iGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~~~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF--NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR--------AITSAYY 73 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 8999999999789999999972989--99889874478789999999999999999899972126--------7899873
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 74 ~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAk~g~nV 153 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNV 153 (165)
T ss_pred HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 32051489862698899999999999999855577359870234786885788899999999985997999678889298
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
T Consensus 154 ~e~F~~l~~~i 164 (165)
T cd01868 154 EEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986