HHsearch alignment for GI: 254780809 and conserved domain: cd01874
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.28 E-value=2.7e-11 Score=98.11 Aligned_cols=132 Identities=21% Similarity=0.284 Sum_probs=89.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 2 vKvv~lGd~~VGKTsli~r~~~~~f--~~~y~pti~~~~~~~~~~~~~~v~l~iwDTaG~e~~~--------~l~~~~~~ 71 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD--------RLRPLSYP 71 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCH--------HHHHHHHH
T ss_conf 7999989999588999999964989--9986786347899999999999999999899974512--------46588771
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------------HH-----------H
Q ss_conf 3011020135898566343------------12898532222333446542---------------00-----------0
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------------EE-----------Y 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------------~~-----------~ 339 (440)
T Consensus 72 ~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~ 151 (175)
T cd01874 72 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK 151 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 38888999637987889999999999999829899889999872033566667776440265668999999999759959
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0013333232358999999999
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
T Consensus 152 y~EtSAk~g~nV~e~F~~~i~~ 173 (175)
T cd01874 152 YVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEECCCCCCCCHHHHHHHHHHH
T ss_conf 9991337895979999999998