HHsearch alignment for GI: 254780809 and conserved domain: cd01874

>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.28  E-value=2.7e-11  Score=98.11  Aligned_cols=132  Identities=21%  Similarity=0.284  Sum_probs=89.6

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         2 vKvv~lGd~~VGKTsli~r~~~~~f--~~~y~pti~~~~~~~~~~~~~~v~l~iwDTaG~e~~~--------~l~~~~~~   71 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD--------RLRPLSYP   71 (175)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCH--------HHHHHHHH
T ss_conf             7999989999588999999964989--9986786347899999999999999999899974512--------46588771


Q ss_pred             HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------------HH-----------H
Q ss_conf             3011020135898566343------------12898532222333446542---------------00-----------0
Q gi|254780809|r  298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------------EE-----------Y  339 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------------~~-----------~  339 (440)
T Consensus        72 ~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~  151 (175)
T cd01874          72 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK  151 (175)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             38888999637987889999999999999829899889999872033566667776440265668999999999759959


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0013333232358999999999
Q gi|254780809|r  340 DHLISSFTGEGLEELINKIKSI  361 (440)
Q Consensus       340 ~~~ISaktg~Gi~~L~~~I~~~  361 (440)
T Consensus       152 y~EtSAk~g~nV~e~F~~~i~~  173 (175)
T cd01874         152 YVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             EEECCCCCCCCHHHHHHHHHHH
T ss_conf             9991337895979999999998