HHsearch alignment for GI: 254780809 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.33  E-value=9.2e-12  Score=101.39  Aligned_cols=139  Identities=20%  Similarity=0.273  Sum_probs=94.0

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             2302431146631888999985520002345468721100012456835--89995081000241035666678889985
Q gi|254780809|r  219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV  296 (440)
Q Consensus       219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i  296 (440)
T Consensus         3 ~~KivlvGd~~VGKTsli~r~~~~~F--~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~~-~-----~--~~~~~   72 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD-R-----L--RTLSY   72 (191)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHH-H-----H--HHHHH
T ss_conf             18999999999899999999972999--9864662100046789999999999998588870035-6-----7--78774


Q ss_pred             HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCH----------------------H----
Q ss_conf             03011020135898566343------------128985322223334465420----------------------0----
Q gi|254780809|r  297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE----------------------E----  338 (440)
Q Consensus       297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~----------------------~----  338 (440)
T Consensus        73 ~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~~a~~~~~~  152 (191)
T cd01875          73 PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV  152 (191)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             47868999985797788999999999999970969978999888010234577888776413755699999999980998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             00013333232358999999999632203
Q gi|254780809|r  339 YDHLISSFTGEGLEELINKIKSILSNKFK  367 (440)
Q Consensus       339 ~~~~ISaktg~Gi~~L~~~I~~~l~~~~~  367 (440)
T Consensus       153 ~y~EtSAkt~~nV~e~F~~l~k~il~~~~  181 (191)
T cd01875         153 KYLECSALNQDGVKEVFAEAVRAVLNPTP  181 (191)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             89990689896989999999999807899