HHsearch alignment for GI: 254780809 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=100.00 E-value=2.8e-34 Score=257.65 Aligned_cols=173 Identities=32% Similarity=0.434 Sum_probs=141.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHCC-CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCC
Q ss_conf 325888864010001121233322345--5432023-0243114663188899998552000234546872110001245
Q gi|254780809|r 187 FSSKEVLNDILFLKNDISSHISQGKLG--EIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 (440)
Q Consensus 187 ~~~~~~~~~i~~i~~~l~~ll~~~~~~--~~l~~g~-~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~ 263 (440)
T Consensus 6 ~~~~~i~~ri~~l~~~l~k~~~~~~~~r~~r~~~g~p~VaivG~PNvGKSTLlN~L~g~~-~~v~~~~~tT~d~~~~~i~ 84 (204)
T cd01878 6 TDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLR 84 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCCEEEEEE
T ss_conf 999999999999999999999999999888774599879998899998999999994899-6341567764576366899
Q ss_pred C-CCEEEEEEECCH-HCCC-CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHH-------H-----HCCCCCCCCCCC
Q ss_conf 6-835899950810-0024-10356666788899850301102013589856634-------3-----128985322223
Q gi|254780809|r 264 L-EGYLVKISDTAG-IRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------F-----PKNIDFIFIGTK 328 (440)
Q Consensus 264 i-~g~~~~l~DTaG-ir~t-~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~-------~-----~~~~~~i~V~NK 328 (440)
T Consensus 85 ~~~~~~i~l~DT~G~i~~~p~~lie~--~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NK 162 (204)
T cd01878 85 LPDGREVLLTDTVGFIRDLPHQLVEA--FRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNK 162 (204)
T ss_pred ECCCCEEEEEECCCCCCCCCHHHHHH--HHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 56997799983686446783789999--9999999973989999997998536677999999999806555760788867
Q ss_pred CCCCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 334465420--------0000133332323589999999996
Q gi|254780809|r 329 SDLYSTYTE--------EYDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 329 ~Dl~~~~~~--------~~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
T Consensus 163 iDl~~~~~~~~~~~~~~~~~i~ISA~~g~Gid~L~~~I~e~L 204 (204)
T cd01878 163 IDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 047995758999970899879998868949999999999559