HHsearch alignment for GI: 254780809 and conserved domain: cd01884

>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.99  E-value=1.5e-09  Score=86.11  Aligned_cols=106  Identities=16%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHH-----------CCCC----CCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHH
Q ss_conf             3024311466318889999855200-----------0234----546872110001245683589995081000241035
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDV-----------AIVT----DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV  284 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~-----------aIVs----~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~I  284 (440)
T Consensus         3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~---   79 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI---   79 (195)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHH---
T ss_conf             79999960588698999999998866344441120010054666505886144189996088169962689607788---


Q ss_pred             HHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCC-CCCCCCCCCCCC
Q ss_conf             66667888998503011020135898566--------34312898-532222333446
Q gi|254780809|r  285 EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNID-FIFIGTKSDLYS  333 (440)
Q Consensus       285 E~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~-~i~V~NK~Dl~~  333 (440)
T Consensus        80 -----~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~  132 (195)
T cd01884          80 -----KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD  132 (195)
T ss_pred             -----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             -----89986351136268998527787478999999999809996279996877898