HHsearch alignment for GI: 254780809 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1.4e-19 Score=155.73 Aligned_cols=135 Identities=23% Similarity=0.300 Sum_probs=95.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCC---CCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012---45683589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~---~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 1 P~VaivG~~n~GKSTL~n~L~~~~~~-~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~-------~~-~~~~ 71 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-------MR-ARGA 71 (168)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC-EEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHH-------HH-HHHH
T ss_conf 98999948998598999998586750-451698168715399998825887189998998167799-------99-9998
Q ss_pred HHHCCEEECCCCCCH---HHH-----HHHCCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHH
Q ss_conf 030110201358985---663-----43128985322223334465420--------------------00001333323
Q gi|254780809|r 297 ENADLILLLKEINSK---KEI-----SFPKNIDFIFIGTKSDLYSTYTE--------------------EYDHLISSFTG 348 (440)
Q Consensus 297 ~~aDlil~v~D~~~~---~~~-----~~~~~~~~i~V~NK~Dl~~~~~~--------------------~~~~~ISaktg 348 (440)
T Consensus 72 ~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG 151 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTG 151 (168)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCC
T ss_conf 62688999986466754589999999987699789999893089879899999999975452455289875999989999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 235899999999963
Q gi|254780809|r 349 EGLEELINKIKSILS 363 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l~ 363 (440)
T Consensus 152 ~gi~~L~~~i~~~a~ 166 (168)
T cd01887 152 EGIDDLLEAILLLAE 166 (168)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 899999999999971