HHsearch alignment for GI: 254780809 and conserved domain: cd01893
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.44 E-value=6.8e-13 Score=109.24 Aligned_cols=132 Identities=22% Similarity=0.311 Sum_probs=92.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCC--CEEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568--35899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~--g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 1 lKiv~vGd~~VGKTsli~r~~~~~F--~~~~~-~t~~~~~~~~~~~~~~v~l~i~DtaG~e~~~--------~~~~~~~~ 69 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF--PENVP-RVLPEITIPADVTPERVPTTIVDTSSRPQDR--------ANLAAEIR 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCC-CCCCCEEEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHHC
T ss_conf 9899999999899999999984978--88777-6345689999988909999999899872302--------45798736
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH------------H-----HHHHHHHHH
Q ss_conf 3011020135898566343------------1289853222233344654200------------0-----001333323
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE------------Y-----DHLISSFTG 348 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~------------~-----~~~ISaktg 348 (440)
T Consensus 70 ~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~EtSAktg 149 (166)
T cd01893 70 KANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 89889999708987789999999999999868999689999886540025033588999999997307488999065889
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23589999999996
Q gi|254780809|r 349 EGLEELINKIKSIL 362 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l 362 (440)
T Consensus 150 ~nV~e~F~~~~k~~ 163 (166)
T cd01893 150 INVSEVFYYAQKAV 163 (166)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 19899999999998