HHsearch alignment for GI: 254780809 and conserved domain: cd01896
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.93 E-value=1.5e-26 Score=203.96 Aligned_cols=142 Identities=24% Similarity=0.310 Sum_probs=113.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683589995081000241035666678889985030
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
T Consensus 1 a~V~LVG~PN~GKSTLln~LT~a~-~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~g~g-~~~l~~~r~a 78 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRG-RQVIAVARTA 78 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHH-HHHHHHHHHC
T ss_conf 959999999999999999997899-54369897875747779998998999996730024633332068-9999998758
Q ss_pred CCEEECCCCCCHHHH--------H-----------------------------------------H--------------
Q ss_conf 110201358985663--------4-----------------------------------------3--------------
Q gi|254780809|r 300 DLILLLKEINSKKEI--------S-----------------------------------------F-------------- 316 (440)
Q Consensus 300 Dlil~v~D~~~~~~~--------~-----------------------------------------~-------------- 316 (440)
T Consensus 79 D~il~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~il~e~~i~~a~v~i~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99999984798266789999999860511035787625777135867860456666688899999999827676437860
Q ss_pred ---------------HCCCCCCCCCCCCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------12898532222333446542------000001333323235899999999963
Q gi|254780809|r 317 ---------------PKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 317 ---------------~~~~~~i~V~NK~Dl~~~~~------~~~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
T Consensus 159 ~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~ee~~~~~~~~~~i~ISA~~g~gld~L~~~I~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 57888898998735767673799997403699899998646798599988889898999999999839