HHsearch alignment for GI: 254780809 and conserved domain: cd01900
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.35 E-value=6.4e-12 Score=102.51 Aligned_cols=89 Identities=25% Similarity=0.273 Sum_probs=68.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC---------------E--EEEEEECCHHCCCCHHH
Q ss_conf 243114663188899998552000234546872110001245683---------------5--89995081000241035
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---------------Y--LVKISDTAGIRETDDIV 284 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g---------------~--~~~l~DTaGir~t~d~I 284 (440)
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~-~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~G 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 95647899988999999977998-74589977726805899677565889987317765123578998546556775236
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCCCCHH
Q ss_conf 6666788899850301102013589856
Q gi|254780809|r 285 EKEGIKRTFLEVENADLILLLKEINSKK 312 (440)
Q Consensus 285 E~~GI~ra~~~i~~aDlil~v~D~~~~~ 312 (440)
T Consensus 80 eGLG-N~FL~~Ir~vDai~hVVR~F~d~ 106 (274)
T cd01900 80 EGLG-NKFLSHIREVDAIAHVVRCFEDD 106 (274)
T ss_pred CCCC-HHHHHHHHHCCEEEEEHHHCCCC
T ss_conf 7650-89999987346346532111577