HHsearch alignment for GI: 254780809 and conserved domain: cd03114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.22 E-value=1.9e-06 Score=64.58 Aligned_cols=98 Identities=30% Similarity=0.377 Sum_probs=63.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC------HHCCCCCCCCCCE-------EECCCC---------------------------
Q ss_conf 243114663188899998552------0002345468721-------100012---------------------------
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTR-------DVLTID--------------------------- 261 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~------~~aIVs~~~GTTR-------D~i~~~--------------------------- 261 (440)
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 76258997878999999999999789837999968887866862032354534415799836863466665420468899
Q ss_pred -----CCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCC----CCCCCCCCCCC
Q ss_conf -----4568358999508100024103566667888998503011020135898566343128----98532222333
Q gi|254780809|r 262 -----LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN----IDFIFIGTKSD 330 (440)
Q Consensus 262 -----~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~~----~~~i~V~NK~D 330 (440)
T Consensus 82 ~~i~~l~~~g~D~IiIETvGvGQse~-----------~i~~~aD~~i~v~~p~~GD~iQ~~K~gi~e~aDl~vvNK~D 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQSEV-----------DIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHH-----------HHHHHCCEEEEEECCCCCCHHHHCCCCHHHCCCEEEEECCC
T ss_conf 99999997599989997487775602-----------65543566999963688737761122852124699993789