>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=95.33  E-value=0.0094  Score=38.88  Aligned_cols=45  Identities=27%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEE
Q ss_conf             320230243114663188899998552000234546872110001245683589995
Q gi|254780809|r  216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS  272 (440)
Q Consensus       216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~  272 (440)
T Consensus        25 i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~----p~--------~G~I~i~g~~i~~~   69 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD----PT--------SGEILIDGVDLRDL   69 (171)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEECCCC
T ss_conf             85998999999999839999999976775----89--------74899999998859