HHsearch alignment for GI: 254780809 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.0063 Score=40.09 Aligned_cols=44 Identities=27% Similarity=0.518 Sum_probs=31.8
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE
Q ss_conf 432023024311466318889999855200023454687211000124568358
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~ 268 (440)
T Consensus 29 ~i~~Ge~~~llGpnGaGKSTLl~~l~g~~------~~~~----~~G~i~~~g~~ 72 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRK------TAGV----ITGEILINGRP 72 (192)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC------CCCC----EEEEEEECCEE
T ss_conf 99288399999999998899999983798------7883----17899987827