HHsearch alignment for GI: 254780809 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0038 Score=41.64 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
T Consensus 25 i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p------------~~G~I~i~g~~i~~~~~~~~ 74 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDV------------DSGRILIDGHDVRDYTLASL 74 (234)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC------------CCCEEEECCEECCCCCHHHH
T ss_conf 879999999989998299999999667667------------88689999999660899999