HHsearch alignment for GI: 254780809 and conserved domain: cd03254
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0019 Score=43.65 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECC
Q ss_conf 320230243114663188899998552000234546872110001245683589995081
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTa 275 (440)
T Consensus 26 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~----p~--------~G~I~idg~~i~~~~~~ 73 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYD----PQ--------KGQILIDGIDIRDISRK 73 (229)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEECCCCCHH
T ss_conf 87999999999999809999999966866----78--------73899999995418999