HHsearch alignment for GI: 254780809 and conserved domain: cd03288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.07 E-value=0.011 Score=38.51 Aligned_cols=43 Identities=28% Similarity=0.320 Sum_probs=33.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 3202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
T Consensus 44 I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~----p--------~~G~I~idg~di~ 86 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVD----I--------FDGKIVIDGIDIS 86 (257)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCCC----C--------CCCEEEECCEEHH
T ss_conf 87999999999999819999999960566----7--------8888999989968