HHsearch alignment for GI: 254780809 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.022 Score=36.32 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=32.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p----~--------sG~I~i~G~di 62 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETP----Q--------SGRVLINGVDV 62 (211)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC----C--------CEEEEECCEEC
T ss_conf 889989999999995599999999769998----8--------52999999999