HHsearch alignment for GI: 254780809 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.17 E-value=0.037 Score=34.72 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 4320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
T Consensus 22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p------------~~G~I~~~g~~i 64 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEP------------TSGRIYIGGRDV 64 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC------------CCEEEEECCEEC
T ss_conf 9869989999999988099999999769999------------863999999999