HHsearch alignment for GI: 254780809 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.48 E-value=2.3e-13 Score=112.52 Aligned_cols=135 Identities=17% Similarity=0.233 Sum_probs=93.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCC-CC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456-83--58999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDL-EG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i-~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
T Consensus 1 iKivllGd~gVGKTsli~r~~~~~~~f~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~~~--------~l~~~~ 72 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS--------DMVSNY 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHH--------HHHHHH
T ss_conf 999999959958899999999788866888888645788999999789979999999799984006--------789999
Q ss_pred HHHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 503011020135898566343-----------1289853222233344654200-------------0001333323235
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 73 ~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV 152 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY 152 (164)
T ss_pred HHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 76426899997077466899999999999976689868999872244524556999999999988998999866889098
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
T Consensus 153 ~e~F~~lar~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986