HHsearch alignment for GI: 254780809 and conserved domain: cd04104
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.76 E-value=7.1e-08 Score=74.41 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=66.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHC-----CHHCCCCCCCCCCEEECCCCCCCCCE-EEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf 3024311466318889999855-----20002345468721100012456835-89995081000241035666678889
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~-----~~~aIVs~~~GTTRD~i~~~~~i~g~-~~~l~DTaGir~t~d~IE~~GI~ra~ 293 (440)
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~-eTT~~~~~Y--~~p~~pnv~lwDlPG~Gt~~f~~~~Y-l--~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVV-ETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPDDY-L--EE 75 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCEEC--CCCCCCCCEEECCCCCCCCCCCHHHH-H--HH
T ss_conf 179995589986899999986889887775888887-467786204--79999987697289999876598999-9--86
Q ss_pred HHHHHHCCEEECCCCC-CHHHHHH-----HCCCCCCCCCCCCCCC
Q ss_conf 9850301102013589-8566343-----1289853222233344
Q gi|254780809|r 294 LEVENADLILLLKEIN-SKKEISF-----PKNIDFIFIGTKSDLY 332 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~-~~~~~~~-----~~~~~~i~V~NK~Dl~ 332 (440)
T Consensus 76 ~~~~~yD~fiiiss~rf~~nd~~la~~i~~~gK~fyfVRsK~D~d 120 (197)
T cd04104 76 MKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 585545789998388641426999999998099289998612140