>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

Probab=99.39 E-value=1.9e-12 Score=106.15 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=91.8 Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985 Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440) Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440) T Consensus 1 aKivlvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~--------l~~~y~ 70 (170) T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC--------IASTYY 70 (170) T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHH T ss_conf 9899999899898999999963988--997256345058999999999999999998999974664--------437773 Q ss_pred HHHCCEEECCCCCCHHHHHH--------H-----CCCCCCCCCCCCCCCCCCCH-----H----------HHHHHHHHHH Q ss_conf 03011020135898566343--------1-----28985322223334465420-----0----------0001333323 Q gi|254780809|r 297 ENADLILLLKEINSKKEISF--------P-----KNIDFIFIGTKSDLYSTYTE-----E----------YDHLISSFTG 348 (440) Q Consensus 297 ~~aDlil~v~D~~~~~~~~~--------~-----~~~~~i~V~NK~Dl~~~~~~-----~----------~~~~ISaktg 348 (440) T Consensus 71 r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E~SAk~g 150 (170) T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSG 150 (170) T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECCCCC T ss_conf 27875899997898789999999999999850899982999998413798755764489999999877987999855788 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 235899999999963 Q gi|254780809|r 349 EGLEELINKIKSILS 363 (440) Q Consensus 349 ~Gi~~L~~~I~~~l~ 363 (440) T Consensus 151 ~nV~e~F~~ia~~~~ 165 (170) T cd04108 151 ENVREFFFRVAALTF 165 (170) T ss_pred CCHHHHHHHHHHHHH T ss_conf 187999999999998

HHsearch alignment for GI: 254780809 and conserved domain: cd04108