HHsearch alignment for GI: 254780809 and conserved domain: cd04119

>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.39  E-value=1.5e-12  Score=106.82  Aligned_cols=133  Identities=20%  Similarity=0.249  Sum_probs=91.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             3024311466318889999855200023454-68721100012456835--89995081000241035666678889985
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV  296 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i  296 (440)
T Consensus         1 lKivvvG~~~vGKTSLi~r~~~~~f--~~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~~~--------~~~~~~~   70 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRF--VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL--------EVRNEFY   70 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf             9899999599568999999963999--99858976557779999999999999999899976478--------9999998


Q ss_pred             HHHCCEEECCCCCCHHHHHH-----------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHH
Q ss_conf             03011020135898566343-----------------1289853222233344654200-------------00013333
Q gi|254780809|r  297 ENADLILLLKEINSKKEISF-----------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSF  346 (440)
Q Consensus       297 ~~aDlil~v~D~~~~~~~~~-----------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISak  346 (440)
T Consensus        71 ~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~Sak  150 (168)
T cd04119          71 KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSAC  150 (168)
T ss_pred             HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf             74778899950897444899999999999982453456686299985403444257889999999999869989998857


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             2323589999999996
Q gi|254780809|r  347 TGEGLEELINKIKSIL  362 (440)
Q Consensus       347 tg~Gi~~L~~~I~~~l  362 (440)
T Consensus       151 ~g~~V~e~F~~l~~~i  166 (168)
T cd04119         151 TGEGVNEMFQTLFSSI  166 (168)
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             7908899999999997