HHsearch alignment for GI: 254780809 and conserved domain: cd04126
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.31 E-value=1.3e-11 Score=100.35 Aligned_cols=132 Identities=23% Similarity=0.287 Sum_probs=89.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE-EECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721-1000124568358999508100024103566667888998503
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR-D~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
T Consensus 1 lKivllGd~~VGKTsl~~rf~~~~F---~~~~~Tig~~~~~--k~~~~~~l~IwDTaGqE~f~--------sl~~~y~r~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRF---KDTVSTVGGAFYL--KQWGPYNISIWDTAGREQFH--------GLGSMYCRG 67 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC---CCCCCCCCEEEEE--EECCEEEEEEEECCCCCCCC--------CCHHHHHCC
T ss_conf 9899999999889999999972989---9988871368999--87647889999479862243--------326888567
Q ss_pred HCCEEECCCCCCHHHHHHH------------CCCCCCCCCCCCCCCCCCC----------------------H-------
Q ss_conf 0110201358985663431------------2898532222333446542----------------------0-------
Q gi|254780809|r 299 ADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTYT----------------------E------- 337 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~~------------~~~~~i~V~NK~Dl~~~~~----------------------~------- 337 (440)
T Consensus 68 a~~~ilvyDit~~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~Vs~ee~~~~a~ 147 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYK 147 (220)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98899999798989999999999999984799980899988712136434433333332234410035448999999999
Q ss_pred H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0-----------------00013333232358999999999632
Q gi|254780809|r 338 E-----------------YDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 338 ~-----------------~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i~~ 191 (220)
T cd04126 148 RINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred HHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 85022022211112457769991478997989999999999999