HHsearch alignment for GI: 254780809 and conserved domain: cd04129

>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.26  E-value=1.8e-11  Score=99.30  Aligned_cols=135  Identities=24%  Similarity=0.333  Sum_probs=91.2

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         2 ~KivllGd~~VGKTsLi~r~~~~~f--~~~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~~------~--~~~~~~   71 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEF--PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER------L--RPLSYS   71 (187)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC------C--CCCEEC
T ss_conf             1999999899768999999982989--99878866789899999999999999997888703454------6--041233


Q ss_pred             HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC-------------H-------H----HHH
Q ss_conf             3011020135898566343------------12898532222333446542-------------0-------0----000
Q gi|254780809|r  298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT-------------E-------E----YDH  341 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~-------------~-------~----~~~  341 (440)
T Consensus        72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~~~~~y~  151 (187)
T cd04129          72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM  151 (187)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             88589997026986679999999999999858799889998860011341121112231557899999999984997899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13333232358999999999632
Q gi|254780809|r  342 LISSFTGEGLEELINKIKSILSN  364 (440)
Q Consensus       342 ~ISaktg~Gi~~L~~~I~~~l~~  364 (440)
T Consensus       152 EtSAk~~~nV~e~F~~~~r~~l~  174 (187)
T cd04129         152 ECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHH
T ss_conf             96889997989999999999975