HHsearch alignment for GI: 254780809 and conserved domain: cd04129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.26 E-value=1.8e-11 Score=99.30 Aligned_cols=135 Identities=24% Similarity=0.333 Sum_probs=91.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 2 ~KivllGd~~VGKTsLi~r~~~~~f--~~~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~~------~--~~~~~~ 71 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF--PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER------L--RPLSYS 71 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC------C--CCCEEC
T ss_conf 1999999899768999999982989--99878866789899999999999999997888703454------6--041233
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC-------------H-------H----HHH
Q ss_conf 3011020135898566343------------12898532222333446542-------------0-------0----000
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT-------------E-------E----YDH 341 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~-------------~-------~----~~~ 341 (440)
T Consensus 72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~~~~~y~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 88589997026986679999999999999858799889998860011341121112231557899999999984997899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13333232358999999999632
Q gi|254780809|r 342 LISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 342 ~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
T Consensus 152 EtSAk~~~nV~e~F~~~~r~~l~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EECCCCCCCHHHHHHHHHHHHHH
T ss_conf 96889997989999999999975