HHsearch alignment for GI: 254780809 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.33 E-value=8.6e-12 Score=101.59 Aligned_cols=134 Identities=21% Similarity=0.274 Sum_probs=93.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~~F--~~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~~--------~l~~~~y~ 71 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLRPLSYR 71 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHHC
T ss_conf 7999989999779999999965989--9986785358999999999989999999799976542--------46898726
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC------------H-H-----------HHH
Q ss_conf 3011020135898566343------------12898532222333446542------------0-0-----------000
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT------------E-E-----------YDH 341 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~------------~-~-----------~~~ 341 (440)
T Consensus 72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~ 151 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 78757999978987899999999999999868499889999863202122233330246777799999999977997899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1333323235899999999963
Q gi|254780809|r 342 LISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 342 ~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
T Consensus 152 EtSAk~~~nV~e~F~~~~~~il 173 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred EECCCCCCCHHHHHHHHHHHHH
T ss_conf 9478988098999999999980