HHsearch alignment for GI: 254780809 and conserved domain: cd04133

>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.33  E-value=8.6e-12  Score=101.59  Aligned_cols=134  Identities=21%  Similarity=0.274  Sum_probs=93.6

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         2 iKivllGd~~VGKTsL~~rf~~~~F--~~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~~--------~l~~~~y~   71 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLRPLSYR   71 (176)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHHC
T ss_conf             7999989999779999999965989--9986785358999999999989999999799976542--------46898726


Q ss_pred             HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC------------H-H-----------HHH
Q ss_conf             3011020135898566343------------12898532222333446542------------0-0-----------000
Q gi|254780809|r  298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT------------E-E-----------YDH  341 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~------------~-~-----------~~~  341 (440)
T Consensus        72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~  151 (176)
T cd04133          72 GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI  151 (176)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             78757999978987899999999999999868499889999863202122233330246777799999999977997899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1333323235899999999963
Q gi|254780809|r  342 LISSFTGEGLEELINKIKSILS  363 (440)
Q Consensus       342 ~ISaktg~Gi~~L~~~I~~~l~  363 (440)
T Consensus       152 EtSAk~~~nV~e~F~~~~~~il  173 (176)
T cd04133         152 ECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             EECCCCCCCHHHHHHHHHHHHH
T ss_conf             9478988098999999999980