HHsearch alignment for GI: 254780809 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.34 E-value=8.5e-12 Score=101.64 Aligned_cols=137 Identities=23% Similarity=0.299 Sum_probs=92.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456835--8999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~------i--~~~~y~~ 71 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF--PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR------L--RSLSYAD 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCH------H--HHHHHCC
T ss_conf 899999799769999999970999--99868837899999999999999999984778500003------5--5676437
Q ss_pred HCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH--------------------------HH
Q ss_conf 011020135898566343------------1289853222233344654200--------------------------00
Q gi|254780809|r 299 ADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE--------------------------YD 340 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~--------------------------~~ 340 (440)
T Consensus 72 a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~y 151 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 86459999789878999999999999997497997899998800465323567776630466589999999998299789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 013333232358999999999632203
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKSILSNKFK 367 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~~l~~~~~ 367 (440)
T Consensus 152 ~EtSAkt~~nV~e~F~~lar~~l~~~~ 178 (189)
T cd04134 152 LECSAKLNRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 996806794989999999999973589