HHsearch alignment for GI: 254780809 and conserved domain: cd04136

>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.47  E-value=2.1e-13  Score=112.74  Aligned_cols=133  Identities=23%  Similarity=0.309  Sum_probs=96.8

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         2 fKivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~~~~~y~~   71 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT--------AMRDLYIK   71 (163)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCHHHH--------HHHHHHHC
T ss_conf             1999989999889999999971959--8866995420699999999999999864576544555--------67898834


Q ss_pred             HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf             3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r  298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL  351 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi  351 (440)
T Consensus        72 ~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAk~~~nV  151 (163)
T cd04136          72 NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINV  151 (163)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             68769997048988999999999999998618888867876235472640789999999999984998999744878058


Q ss_pred             HHHHHHHHHHH
Q ss_conf             89999999996
Q gi|254780809|r  352 EELINKIKSIL  362 (440)
Q Consensus       352 ~~L~~~I~~~l  362 (440)
T Consensus       152 ~e~F~~l~~~i  162 (163)
T cd04136         152 DEVFADLVRQI  162 (163)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999963