HHsearch alignment for GI: 254780809 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.47 E-value=2.1e-13 Score=112.74 Aligned_cols=133 Identities=23% Similarity=0.309 Sum_probs=96.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 2 fKivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~~~~~y~~ 71 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT--------AMRDLYIK 71 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCHHHH--------HHHHHHHC
T ss_conf 1999989999889999999971959--8866995420699999999999999864576544555--------67898834
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 72 ~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAk~~~nV 151 (163)
T cd04136 72 NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINV 151 (163)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 68769997048988999999999999998618888867876235472640789999999999984998999744878058
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
T Consensus 152 ~e~F~~l~~~i 162 (163)
T cd04136 152 DEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999963