HHsearch alignment for GI: 254780809 and conserved domain: cd04139
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.52 E-value=7.1e-14 Score=116.06 Aligned_cols=134 Identities=22% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683--5899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 1 fKvvlvGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~--------~l~~~~~~ 70 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA--------AIRDNYHR 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHHH
T ss_conf 9799999999889999999971989--8774885441689999999999999999898866248--------89999886
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 71 ~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~E~SAk~g~nV 150 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNV 150 (164)
T ss_pred HCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 37688999977977889999999999998608788636987330323341778999999999983998999826879088
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
T Consensus 151 ~~~F~~l~~~i~ 162 (164)
T cd04139 151 EKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997