HHsearch alignment for GI: 254780809 and conserved domain: cd04139

>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.52  E-value=7.1e-14  Score=116.06  Aligned_cols=134  Identities=22%  Similarity=0.268  Sum_probs=95.1

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             30243114663188899998552000234546872110001245683--5899950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         1 fKvvlvGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~--------~l~~~~~~   70 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA--------AIRDNYHR   70 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHHH
T ss_conf             9799999999889999999971989--8774885441689999999999999999898866248--------89999886


Q ss_pred             HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf             3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r  298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL  351 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi  351 (440)
T Consensus        71 ~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~E~SAk~g~nV  150 (164)
T cd04139          71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNV  150 (164)
T ss_pred             HCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             37688999977977889999999999998608788636987330323341778999999999983998999826879088


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999999963
Q gi|254780809|r  352 EELINKIKSILS  363 (440)
Q Consensus       352 ~~L~~~I~~~l~  363 (440)
T Consensus       151 ~~~F~~l~~~i~  162 (164)
T cd04139         151 EKAFYDLVREIR  162 (164)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999997